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We have a unique collection of protocols from journals and patents. We have listed thousands of protocols and in most cases, the titles of protocols listed in our site are similar to the "Materials & Methods" section of the journals. Sometimes, it is not easy to categorize these protocols. We are in the process of categorizing these protocols. Meantime, we strongly recommend you to search for the protocols using the search function.
Bioprotocols > Biological imaging

Biological imaging Protocols

The protocols listed in this section are extracted from scientific journals or patents or laboratory websites. We have cited only the journals that are freely available to view. Please be informed that the free services offered by listed journals may not be available globally. If you find difficulty in viewing the journals listed in our site, please let us know.
3D Cryo-Imaging
Anat Rec (Hoboken). 2009 March; 292(3): 342-351.
Link to the Protocol

3D DNA FISH
J Cell Biol. 2009 Apr 6;185(1):87-100
Link to the Protocol

Automatic Image Acquisition
Genome Res. 2004 Jun;14(6):1130-6
Link to the Protocol

Bioluminescence imaging (Mouse)
PLoS ONE. 2009; 4(5): e5620
Link to the Protocol

Bioluminescent imaging of stem cells
WO/2008/144052
Link to the Protocol

Bioluminescence measurements of in vitro cultured liver stages using a microplate reader (luminometer)
PLoS One. 2009 Nov 18;4(11):e7881.
Link to the Protocol

Bioluminescence Imaging 9Cell array)
Biotechnol Bioeng. 2007 Oct 1;98(2):486-97
Link to the Protocol

Bioluminescence Imaging (BLI)
PLoS ONE 4(11): e7706.
Link to the Protocol

Bioluminescence imaging of engraftment patterns of human progenitor and HSC populations in immunodeficient mice
Blood, 15 November 2003, Vol. 102, No. 10, pp. 3478-3482
Link to the Protocol

Bioluminescence measurements of in vitro cultured liver stages using a microplate reader (luminometer)
PLoS One. 2009 Nov 18;4(11):e7881
Link to the Protocol

Ca2+ Imaging
ASN Neuro. 2009 Nov 11
Link to the Protocol

CEL-I Nuclease Mismatch Assay
Science Vol. 305. no. 5686, pp. 1007 - 1009
Link to the Protocol

Cell micropatterning
Biophys J. 2005 January; 88(1): 647-660
Link to the Protocol

Cleavage and Peptide Mapping of S Protein by Airway Proteases
PLoS One. 2009 Nov 17;4(11):e7870
Link to the Protocol

Cone Beam Micro-CT System
Int J Biomed Imaging. 2009;2009:960573
Link to the Protocol

Confocal laser-scanning microscopy.
Eukaryot Cell. 2009 May;8(5):703-12.
Link to the Protocol

Confocal microscopy and fluorescence quantification (Plants)
J Exp Bot. 2009 July; 60(11): 3157-3165
Link to the Protocol

Contrast stains and sample preparation (MicroCT imaging)
BMC Physiol. 2009 Jun 22;9:11
Link to the Protocol

Correlative Live-Confocal FIB/SEM
PLoS One. 2009; 4(11): e7716.
Link to the Protocol

Dual Imaging of FRET-Based Indicators and Calcium
PLoS One. 2009 Nov 17;4(11):e7877.
Link to the Protocol

Electron Microscopy
J Biol Chem. 2008 Nov 17
Link to the Protocol

Epifluorescence microscopy , Image Acquisition, and Image Analyses
Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13535-40
Link to the Protocol

Epifluorescence microscopy
Molecular and Cellular Biology, May 2008, p. 2884-2895, Vol. 28, No. 9
Link to the Protocol

FACS-Based Cell Tracking
Magn Reson Med. 2009 September; 62(3): 747-753.
Link to the Protocol

FLIM-FRET
Biochem J. 2009 Nov 4.
Link to the Protocol

FLIPR (fluorometric imaging plate reader)
PLoS One. 2009; 4(10): e7596
Link to the Protocol

Fluorescence imaging and cell counts of cultured Purkinje neurons
Methods Enzymol. 2009; 453: 145-158.
Link to the Protocol

Fluorescence Lifetime Imaging Microscopy (FLIM)
PLoS One. 2009 Nov 18;4(11):e7893.
Link to the Protocol

Fluorescent Methotrexate (FMTX) Assay
Cytometry A. 2005 Jul;66(1):9-23.
Link to the Protocol

Fluorometric Imaging Plate Reader (FLIPR).
Proc Natl Acad Sci U S A. 2009 September 15; 106(37): 15950-15955.
Link to the Protocol

Focused Ion Beam/Scanning Electron Microscopy (FIB/SEM)
PLoS One. 2009; 4(11): e7716.
Link to the Protocol

FRAP analysis
BMC Cell Biol. 2009; 10: 67
Link to the Protocol

FRAP and Confocal Microscopy
PLoS One. 2009; 4(11): e7724
Link to the Protocol

FRAP microscopy and data analysis (influenza A virus)
Virology. 2009 Nov 10;394(1):154-63.
Link to the Protocol

Il7 in situ hybridization
PLoS One. 2009; 4(11): e7637
Link to the Protocol

Imaging docked granules with Total Internal Fluorescence Reflection (TIRF) microscopy
PLoS ONE 4(11): e7770
Link to the Protocol

Imaging Fixed Tissues and Antibody Staining
PLoS One. 2009; 4(6): e6068
Link to the Protocol

Imaging Tumor Angiogenesis
US Patent#7,582,281
Link to the Protocol

Imaging Tumor Apoptotic Cells
US Patent#7,582,281
Link to the Protocol

Immunofluorescence confocal microscopy
Virol J. 2009 Oct 16;6:168.
Link to the Protocol

Immunofluorescence microscopy and live cell imaging (Breast cancer cells)
PLoS One. 2009 Oct 1;4(10):e7239.
Link to the Protocol

Immunofluorescence study (DRG neurons)
Mol Pain. 2009 Jun 17;5:31.
Link to the Protocol

Immunofluorescence microscopy
J Cell Biol. 2008 March 10; 180(5): 897-904
Link to the Protocol

Immunohistochemistry and imaging (chicken embryos or retinal explants)
Neural Dev. 2009; 4: 32
Link to the Protocol

In vitro cell labeling
J Transl Med. 2009 Nov 11;7(1):94.
Link to the Protocol

In vitro imaging using multiphoton luminescence
Int J Nanomedicine. 2007 December; 2(4): 813-819.
Link to the Protocol

In vivo Bioluminescence Imaging of Mice
BMC Immunol. 2009; 10: 44
Link to the Protocol

In vivo bioluminescence imaging
J Neurosci. 2008 Apr 23;28(17):4406-13
Link to the Protocol

In Vivo Fluorescence Detection of T-cell Localization
Magn Reson Med. 2009 September; 62(3): 747-753.
Link to the Protocol

In Vivo Gene Transfection and Confocal Microscopy
Mol Pharmacol. 2008 Aug;74(2):443-53.
Link to the Protocol

In vivo microscopy
Mol Vis. 2008; 14: 1929-1939
Link to the Protocol

In Vivo MRI
Magn Reson Med. 2009 September; 62(3): 747-753.
Link to the Protocol

In Vivo T-cell Visualization and Quantification with MRI
Magn Reson Med. 2009 September; 62(3): 747-753.
Link to the Protocol

In Vivo Time-Lapse Imaging (Fish embryos)
PLoS Biol. 2009 November; 7(11): e1000240.
Link to the Protocol

Infrared Imaging (tisseu/organ)
PLoS Med. 2009 May; 6(5): e1000083.
Link to the Protocol

Intravital multiphoton microscopy
PLoS One. 2009; 4(11): e7637
Link to the Protocol

Intrinsic optical signal imaging
J Biol Chem. 2009 Nov 5.
Link to the Protocol

Isolation of Inhibitors of Her-Kinase Expression
BMC Med Imaging. 2008; 8: 13.
Link to the Protocol

Lanthanum Phosphate Co-Precipitation Assays
J Biol Phys. 2008 April; 34(1-2): 51-62
Link to the Protocol

Live cell imaging (HeLa cells)
PLoS One. 2009 Nov 13;4(11):e7827
Link to the Protocol

Live cell imaging (Acutely isolated astrocytes) :Imaging acquisition and processing
ASN Neuro. 2009 Nov 11
Link to the Protocol

Live cell confocal microscopy
Virol J. 2009 Oct 16;6:168.
Link to the Protocol

Live cell imaging with RNA dyes (Plasmodium)
BMC Cell Biol. 2009 Jun 10;10:45
Link to the Protocol

Live Cell Imaging by TIR-FM
Mol Biol Cell. 2009 July 15; 20(14): 3251-3260.
Link to the Protocol

Live cell imaging and FRAP analysis (Neurons)
PLoS One. 2009;4(4):e5250. Epub 2009 Apr 21.
Link to the Protocol

Live cell imaging
PLoS ONE. 2008; 3(6): e2455.
Link to the Protocol

Live Cell Arrays
Genome Res. 2004 Jun;14(6):1130-6
Link to the Protocol

Live imaging of AChR clustering
BMC Neurosci. 2009; 10: 80
Link to the Protocol

Live mice imaging using infrared fluorescent proteins
Science. 2009 May 8;324(5928):804-7.
Link to the Protocol

Live-cell imaging of plant (Medicago) roots
Plant Physiol. 2009 Oct;151(2):809-19.
Link to the Protocol

Long-term Timelapse Microscopy of Suppressor Hits
PLoS One. 2009 Oct 5;4(10):e7339
Link to the Protocol

Lysotracker staining and imaging
PLoS One. 2009 Nov 18;4(11):e7913
Link to the Protocol

Magnetic Resonance Imaging (MRI)- Rat Brain
PLoS One. 2009 Nov 17;4(11):e7868.
Link to the Protocol

Measurement of RalA activity in living cells with Fluorescence resonance energy transfer (FRET) imaging
PLoS ONE 4(11): e7770
Link to the Protocol

Micro-computed tomography
PLoS ONE. 2009; 4(5): e5620
Link to the Protocol

MicroCT imaging systems
BMC Physiol. 2009 Jun 22;9:11
Link to the Protocol

MicroPET CT Imaging
Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11394-9.
Link to the Protocol

microPET : Positron Emission Tomography Imaging for Small Animals
State University of New York at Buffalo (USA)
Link to the Protocol

Microscopy and Neurite Tracing
PLoS One. 2009 Nov 16;4(11):e7859.
Link to the Protocol

MR Imaging Protocol (Whole animal)
PLoS One. 2009; 4(10): e7628.
Link to the Protocol

Myocardial positron emission tomography
Cardiovasc Diabetol. 2009; 8: 39
Link to the Protocol

Near infrared imaging of mice
Int J Nanomedicine. 2009; 4: 123-131
Link to the Protocol

NO Imaging
PLoS One. 2009; 4(10): e7596
Link to the Protocol

noncontact 3-D fluorescence tomography system
Proc Soc Photo Opt Instrum Eng. 2009 Feb 16;7191:
Link to the Protocol

Optical Imaging (Cells and whole mice)
J Transl Med. 2009 Nov 11;7(1):94.
Link to the Protocol

Optical Magnetic Twisting Cytometry
PLoS One. 2009 Nov 18;4(11):e7886
Link to the Protocol

Peptide Imaging of Cancer
US Patent#7,582,281
Link to the Protocol

Phase-contrast and immunofluorescence microscopy
Molecular and Cellular Biology, April 2008, p. 2659-2674, Vol. 28, No. 8
Link to the Protocol

Preparation of liposomal contrast agents
PLoS One. 2009; 4(10): e7628.
Link to the Protocol

Preparation of polymer-coated slides
Nucleic Acids Res. 2004 Feb 18;32(3):e33
Link to the Protocol

Preparation of polymer-coated cell culture plates
Nucleic Acids Res. 2004 Feb 18;32(3):e33
Link to the Protocol

Ratiometric calcium imaging
PLoS One. 2009; 4(10): e7596
Link to the Protocol

Real time measurements of bioluminescence of in vitro cultured liver stages using the Lumina system
PLoS One. 2009 Nov 18;4(11):e7881.
Link to the Protocol

Real time in vivo imaging of liver stage development in whole bodies of live mice or in dissected livers
PLoS One. 2009 Nov 18;4(11):e7881.
Link to the Protocol

Real time measurements of bioluminescence of in vitro cultured liver stages using the Lumina system
PLoS One. 2009 Nov 18;4(11):e7881
Link to the Protocol

Real time in vivo imaging of liver stage development in whole bodies of live mice or in dissected livers
PLoS One. 2009 Nov 18;4(11):e7881
Link to the Protocol

RNA FISH
J Cell Biol. 2009 Apr 6;185(1):87-100
Link to the Protocol

Scintigraphic imaging of EL4 tumors
PLoS ONE. 2009; 4(2): e4558.
Link to the Protocol

SEM
J Cell Biol. 2008 March 10; 180(5): 897-904
Link to the Protocol

Serial Block Face/Scanning Electron Microscopy (SBF/SEM)
PLoS One. 2009; 4(11): e7716.
Link to the Protocol

Setup for dual FRET measurement with a single excitation light
PLoS ONE. 2009; 4(6): e6036.
Link to the Protocol

Simultaneous imaging of cAMP and cGMP
PLoS ONE. 2009; 4(6): e6036.
Link to the Protocol

Simultaneous imaging of cAMP and Ca2+ in highly motile cardiac myocytes
PLoS ONE. 2009; 4(6): e6036.
Link to the Protocol

Single-Molecule Microscopy
PLoS One. 2009; 4(11): e7724
Link to the Protocol

Single-molecule photobleaching kinetics
PLoS One. 2009; 4(11): e7724
Link to the Protocol

Small Animal Imaging
University of Texas Health Science Center at San Antonio (USA)
Link to the Protocol

Spectral FRET
PLoS One. 2009 Nov 18;4(11):e7893.
Link to the Protocol

STK12 Kinase
J Anat. 2007 December; 211(6): 798-809
Link to the Protocol

Susceptibility of Human Airway Epithelial Cell Lines to SARS-CoV Infection
PLoS One. 2009 Nov 17;4(11):e7870
Link to the Protocol

TEM
Yonsei Med J. 2008 Oct 31;49(5):819-27
Link to the Protocol

TEM
J Cell Biol. 2008 March 10; 180(5): 897-904
Link to the Protocol

Time-lapse microscopy (Yeast)
BMC Cell Biol. 2009 Jun 2;10:43
Link to the Protocol

TIRFM Image acquisition & Perfusion Experiments; Quantitation
J Neurosci. 2009 Mar 11;29(10):3328-36
Link to the Protocol

Total internal reflection fluorescence (TIRF) microscopy
Breast Cancer Res. 2009;11(4):R52.
Link to the Protocol

Total Internal Reflection Fluorescence Microscopy (TIRFM)
PLoS One. 2009 Nov 18;4(11):e7893.
Link to the Protocol

Transfection of cells for confocal microscopy and intracellular Ca2+ measurements
BMC Cell Biol. 2009; 10: 67
Link to the Protocol

Transmission Electron Microscopy (TEM) and Morphometry
PLoS One. 2009 Nov 16;4(11):e7854
Link to the Protocol

Visualization of AChRs with Quantum dots
BMC Neurosci. 2009; 10: 80
Link to the Protocol

Whole body fluorescence imaging of live mice
BMC Cancer. 2009; 9: 106.
Link to the Protocol

Whole body Ultrasound Imaging
BMC Cancer. 2009; 9: 106.
Link to the Protocol

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