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We have a unique collection of protocols from journals and patents. We have listed thousands of protocols and in most cases, the titles of protocols listed in our site are similar to the "Materials & Methods" section of the journals. Sometimes, it is not easy to categorize these protocols. We are in the process of categorizing these protocols. Meantime, we strongly recommend you to search for the protocols using the search function.
Bioprotocols > Genomics

Genomics Protocols

The protocols listed in this section are extracted from scientific journals or patents or laboratory websites. We have cited only the journals that are freely available to view. Please be informed that the free services offered by listed journals may not be available globally. If you find difficulty in viewing the journals listed in our site, please let us know.
Affymetrix chicken GeneChips : comparison set-up and statistical analysis
PLoS One. 2009 Nov 17;4(11):e7856.
Link to the Protocol

Affymetrix chicken GeneChips : comparison set-up and statistical analysis
PLoS One. 2009 Nov 17;4(11):e7856
Link to the Protocol

Allele-specific expression analysis
Mol Cell Biol. 2008 Feb;28(3):1092-103.
Link to the Protocol

Array-Based Identification of Novel Cardiac Genes through Differentiation of Mouse ESCs
PLoS ONE. 2008 May 14;3(5):e2176
Link to the Protocol

Array-comparative genomic hybridization (array-CGH)
Nucleic Acids Res. 2009 August; 37(15): e105
Link to the Protocol

Cartilage Collection and RNA Isolation
BMC Musculoskelet Disord. 2008; 9: 149
Link to the Protocol

cDNA amplification and labeling
PLoS Genet. 2009 October; 5(10): e1000670.
Link to the Protocol

cDNA Macroarray
PLoS ONE. 2008;3(11):e3726
Link to the Protocol

cDNA synthesis from single cells or single-cell level total RNA
Nucleic Acids Research 2006 34(5):e42
Link to the Protocol

Characterization of the Gene Expression Profile of Umbilical Cord Epithelial and Mesenchymal Stem Cells
US Patent Application#20060078993
Link to the Protocol

Comparative genomic hybridization and analysis (adipose stem cells)
J. Cell. Mol. Med. Vol 12, No 2, 2008 pp. 553-563
Link to the Protocol

Comparative genomic hybridization
Human Reproduction 2008 23(11):2596-2608
Link to the Protocol

Comparative genomic hybridisation (CGH)
BMC Res Notes. 2008; 1: 56.
Link to the Protocol

Construction of Genomic Libraries
PLoS One. 2009; 4(11): e6576.
Link to the Protocol

Cy labelling and micro array analysis
BMC Dev Biol. 2009; 9: 5.
Link to the Protocol

Development of an RNA amplification protocol to obtain gene expression profiles from a small amount of RNA
BMC Genomics. 2009; 10: 35
Link to the Protocol

Differential Screening
J. Anim. Sci. 2006. 84:1059-1066
Link to the Protocol

DNA microarray : Determination of RNA integrity and microarray statistical analysis
Reprod Biol Endocrinol. 2008 Dec 16;6:64.
Link to the Protocol

DNA Microarray
Syst Synth Biol. 2007 December; 1(4): 171-181
Link to the Protocol

DNA Microarray
PLoS ONE. 2008;3(11):e3710.
Link to the Protocol

DNA Microarray
PLoS Genet. 2008 Oct;4(10):e1000241
Link to the Protocol

DNA Microarray
PLoS Biol. 2008 Oct 28;6(10):e256.
Link to the Protocol

DNA microarray analysis (BMMs or whole thymus)
Genes Dev. 2008 May 15; 22(10): 1381-1396
Link to the Protocol

Establishment of inducible RNAi in embryonic stem cells
Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):20850-5
Link to the Protocol

Exon Array Hybridization
BMC Genomics. 2008; 9: 529
Link to the Protocol

Fluorescence in situ hybridization (FISH) with oligodT-Cy3
PLoS Genet. 2009 October; 5(10): e1000670.
Link to the Protocol

Gene expression analysis
Brain 2008 131(10):2564-2578;
Link to the Protocol

Gene expression profile of the pancreatic endocrine progenitors and their descendants
Diabetes 57:654-668, 2008
Link to the Protocol

Gene expression analysis using In situ hybridization-based screen
Gene Expr Patterns. 2008 February; 8(3): 181-198.
Link to the Protocol

Gene Expression Analysis by qPCR and Microarray (Osteogenic differentiation of hMSCs)
Proc Natl Acad Sci U S A. 2008 May 20; 105(20): 7281-7286
Link to the Protocol

Gene-Expression Analysis (Neuronal cancer stem cells)
Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16466-71
Link to the Protocol

GeneChip microarray hybridization (Differentiation of mouse ES cells into cardiomyocytes)
J. Clin. Invest. 118(3): 894-903 (2008).
Link to the Protocol

Generation of GFP-Expressing hESC Lines
Stem Cells Vol. 26 No. 1 January 2008, pp. 119 -126
Link to the Protocol

Genotyping
Mol Cell Biol. 2008 Feb;28(3):1092-103.
Link to the Protocol

Genotyping and allelic expression determination of human emryonic stem cell lines
Genome Res. 2007 Dec;17(12):1731-42
Link to the Protocol

Identification and Characterization of Biomarkers of Neurodegenerative Disease (Gene expression array analysis,Real-time PCR analysis & Immunohistochemistry)
US Patent Application#20080261226
Link to the Protocol

Identification of Placental Stem Cell-Specific Genes
US Patent Application#20080152629
Link to the Protocol

Isolation of Novel Markers and Regulatory Factors Involved in Neural Stem Cell Proliferation and Differentiation
US Patent#6,294,346
Link to the Protocol

M. tuberculosis whole genome microarray analysis
BMC Genomics. 2008; 9: 94
Link to the Protocol

Microarray Analysis of POA Neurons Expressing EP3 Receptors
J Biol Chem. 2008 Apr 18;283(16):11064-71
Link to the Protocol

Microarray Gene Profiling of Laser-Captured Cells
Atherosclerosis. 2008 October; 200(2): 257-263.
Link to the Protocol

Microarray profiling of mRNA from cell-free saliva
US Patent Application#20080280772
Link to the Protocol

Microarray Profiling of mRNA of Serum
US Patent Application#20080280772
Link to the Protocol

Microarray analysis
Genes & Dev., May 2008; 22: 1174 - 1189
Link to the Protocol

Microarray, hybridization and scanning ( Neural & Hematopoietic stem cells)
BMC Dev Biol. 2007; 7: 129.
Link to the Protocol

Microarray data processing and statistical analysis
BMC Dev Biol. 2007; 7: 129.
Link to the Protocol

Microarray analysis (Multipotent murine follicular keratinocytes)
Journal of Cell Science 121, 609-617 (2008)
Link to the Protocol

Microarray( Hematopoietic Stem Cells)
Cancer Research 64, 4434-4441, July 1, 2004
Link to the Protocol

Microarray-based methylation profiling
Human Molecular Genetics 2006 15(17):2623-2635
Link to the Protocol

Microarray analysis (murine embryonic stem cell-derived cardiomyocytes)
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17428332
Link to the Protocol

Microarray (Cardiac differentiation of MSCs)
PLoS ONE. 2008; 3(5): e2176
Link to the Protocol

Microarray analysis (Prostate cancer cells)
Genome Biol. 2008; 9(5): R83.
Link to the Protocol

Microarray analysis (endothelial differentiation)
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=18498633
Link to the Protocol

Microarray hybridization and scanning
PLoS Genet. 2009 October; 5(10): e1000670.
Link to the Protocol

Microdissection of MCs from tissue sections, RNA extraction, and microarray data analysis
BMC Genomics. 2009; 10: 35
Link to the Protocol

Microsatellite PCR
Breast Cancer Res. 2008; 10(3): R50
Link to the Protocol

New methods to analyse microarray data that partially lack a reference signal
BMC Genomics. 2009 Nov 13;10(1):522
Link to the Protocol

Nucleic Acid in situ Hybridization (Cardiac differentiation of MSCs)
PLoS ONE. 2008; 3(5): e2176
Link to the Protocol

Oligonucleotide microarray analysis
Nucleic Acids Research 2006 34(5):e42
Link to the Protocol

Oligonucleotide microarrays (Umblical cord derived mesenchymal cells)
Folia Histochem Cytobiol. 2008;46(1):45-50
Link to the Protocol

Preparation of Samples for Microarray Studies; Microarray Analysis
PLoS One. 2009; 4(11): e6576.
Link to the Protocol

Q-PCR Validation and Quantitation Analysis of Microarray Profiling from Cell-Free Saliva
US Patent Application#20080280772
Link to the Protocol

RNA amplification and oligonucleotide microarray
BMC Genomics. 2009; 10: 35
Link to the Protocol

RNA extraction and amplification (ES cells)
BMC Dev Biol. 2009; 9: 5.
Link to the Protocol

RNA Extraction, Amplification and Microarray Analysis (Prostate Cancer Stem Cells)
Biochem Biophys Res Commun. 2007 December 28; 364(4): 778-782
Link to the Protocol

RNA isolation and genomic profiling.
US Patent #20080213214
Link to the Protocol

RNA isolation, amplification and labeling ( Neural & Hematopoietic stem cells)
BMC Dev Biol. 2007; 7: 129.
Link to the Protocol

SAGE ( Hematopoietic Stem Cells)
Cancer Research 64, 4434-4441, July 1, 2004
Link to the Protocol

Site-Specific Integration Strategy Using phiC31 integrase
Stem Cells Vol. 26 No. 1 January 2008, pp. 119 -126
Link to the Protocol

Stable Suppression of Gene Expression in Murine Embryonic Stem Cells by RNAi Directed from DNA Vector-Based Short Hairpin RNA
Stem Cells 2004;22:93-99
Link to the Protocol

Suppression Subtractive Hybridization
J. Anim. Sci. 2006. 84:1059-1066
Link to the Protocol

T7 amplification and hybridization to custom-designed cDNA array platforms
Int J Mol Sci. 2008 November; 9(11): 2091-2104
Link to the Protocol

Transcript Profiling
Molecular & Cellular Proteomics 6:1343-1353, 2007.
Link to the Protocol

Transcriptional Profiling
BMC Musculoskelet Disord. 2008; 9: 149
Link to the Protocol

Validation of Microarray Hybridization Results with qPCR
BMC Musculoskelet Disord. 2008; 9: 149
Link to the Protocol

Whole-genome arrays
Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16466-71
Link to the Protocol

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